Species Overview — Dendrogyra cylindrus

CnidoSite currently holds 9 of the 15 data types it covers for Dendrogyra cylindrus. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.

Data available for this species

Genome assembly

✓ available

Assembled genome (size, level, N50, BUSCO)

Open Genome →
Full assembly record · BUSCO · TFs / Ubs · Pan-geneset

Gene annotation

✓ 42,998 records

Predicted gene models with CDS / transcript / protein sequences

Open Gene models →

Functional annotation

✓ available

InterPro, Pfam, PANTHER, GO and KEGG assignments

Open Function →
InterPro by gene ID · Pfam by gene ID · GO by gene ID · KEGG by gene ID

Gene family (orthogroup)

✓ available

OrthoFinder orthogroups and TF / ubiquitin families

Open Gene family →
Orthogroup browser

Bulk transcriptome

✓ 1 record

RNA-seq samples with expression values (TPM)

Open Transcriptome →
Dynamic Expression View

Co-expression network

— not available

Positive / negative co-expression edges

Open Co-expression anyway →

Single-cell

— not available

scRNA-seq datasets, cell atlas and marker genes

Open Single-cell anyway →

Proteome

— not available

Mass-spectrometry proteomics samples

Open Proteome anyway →

Epigenome

— not available

DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq

Open Epigenome anyway →

Metagenome

✓ 3 records

Host-associated metagenomic samples

Open Metagenome →
MAGs Catalog

Phenotype

— not available

Trait measurements with geo-referencing

Open Phenotype anyway →

Paleobiology

✓ available

Fossil occurrences and stratigraphic records

Open Paleobiology →

Mitogenome

✓ 1 record

Mitochondrial genome record and gene annotations

Open Mitogenome →

Transposable elements

— not available

Repeat annotation of assembled genomes

Open TE anyway →

Genome browser

✓ available

Interactive JBrowse track for the assembly

Open JBrowse →

Assembly record

Assembly

Assembly name
PSU_DCyl_1.0.0
Assembly level
Contig
Assembly accession
GCA_043250745.1
Assembled by
The Pennsylvania State University
Year
2024

Genome statistics

Genome size
502.06 Mb
GC content
39.42%
Scaffolds
363
Scaffold N50
40.52 Mb
Contigs
301
Contig N50
4.65 Mb
Chromosomes
15

Annotation

BUSCO
Complete, single-copy 98.1%Complete, duplicated 1.1%Fragmented 0.2%Missing 0.6%
Protein-coding genes
34
Proteins
39

Identifiers

WGS accession
JBGLOB01
BioProject
PRJNA982825

Reference

Reference
Genomes of the Caribbean reef-building corals Colpophyllia natans, Dendrogyra cylindrus, and Siderastrea siderea G3 (Bethesda) [link]

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See all Hexacorallia species in the coverage matrix →

Availability shown here is recomputed from the live database every hour (last built 2026-09-24 19:11). If a data type is listed as unavailable for Dendrogyra cylindrus, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.

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