Isopora palifera · CnidoSite

Species Overview — Isopora palifera

CnidoSite currently holds 3 of the 15 data types it covers for Isopora palifera. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.

Class Hexacorallia
NCBI Taxonomy 105615
See this species in the coverage matrix →

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Data available for this species

Genome assembly

✓ available

Assembled genome (size, level, N50, BUSCO)

Open Genome →

Full assembly record · BUSCO · TFs / Ubs · Pan-geneset

Gene annotation

— not available

Predicted gene models with CDS / transcript / protein sequences

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Functional annotation

— not available

InterPro, Pfam, PANTHER, GO and KEGG assignments

Open Function anyway →

Gene family (orthogroup)

— not available

OrthoFinder orthogroups and TF / ubiquitin families

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Bulk transcriptome

— not available

RNA-seq samples with expression values (TPM)

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Co-expression network

— not available

Positive / negative co-expression edges

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Single-cell

— not available

scRNA-seq datasets, cell atlas and marker genes

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Proteome

— not available

Mass-spectrometry proteomics samples

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Epigenome

— not available

DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq

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Metagenome

— not available

Host-associated metagenomic samples

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Phenotype

— not available

Trait measurements with geo-referencing

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Paleobiology

✓ available

Fossil occurrences and stratigraphic records

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Mitogenome

✓ 19 records

Mitochondrial genome record and gene annotations

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Transposable elements

— not available

Repeat annotation of assembled genomes

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Genome browser

— not available

Interactive JBrowse track for the assembly

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Assembly record

Assembly

Assembly name

jaIsoPali11.1

Assembly level

Chromosome

Assembly accession

GCA_964212065.1

Assembled by

WELLCOME SANGER INSTITUTE

Year

2024

Genome statistics

Genome size

460.35 Mb

GC content

38.99%

Scaffolds

270

Scaffold N50

36.81 Mb

Contigs

1,185

Contig N50

896.7 kb

Chromosomes

Annotation

BUSCO

Complete, single-copy 92.4%Complete, duplicated 1.6%Fragmented 1.4%Missing 4.6%

Protein-coding genes

27,470

Proteins

25,181

Identifiers

WGS accession

CAXOTM01

BioProject

PRJEB78607

Reference

Chromosome-level genomes of scleractinian corals: gene prediction and functional annotation Scientific Data [link]

Other Hexacorallia species

Actinernus sp. WN-2022Actinia equinaActinia mediterraneaActinia tenebrosaAnthopleura xanthogrammicaCondylactis giganteaParacondylactis sinensisActinoscyphia liuiAlvinactis idsseensis sp. Nov.Actinostola sp. cb2023Exaiptasia diaphanaDiadumene lineataEdwardsia elegansNematostella vectensisScolanthus callimorphusParaphelliactis xishaensis sp. nov.Telmatactis stephensoniMetridium senilePlumapathes pennaceaRhodactis osculiferaRicordea floridaAcropora acuminataAcropora austeraAcropora awiAcropora cervicornisAcropora cythereaAcropora digitiferaAcropora echinataAcropora floridaAcropora gemmiferaAcropora hemprichiiAcropora hyacinthusAcropora intermediaAcropora loripesAcropora microphthalmaAcropora milleporaAcropora muricataAcropora nasutaAcropora palmataAcropora pulchraAcropora selagoAcropora spathulataAcropora tenuisAcropora yongeiAstreopora myriophthalmaMontipora cactusMontipora capitataMontipora capricornisMontipora efflorescensMontipora foliosaMontipora griseaLeptoseris scabraPachyseris speciosaStephanocoenia interseptaCatalaphyllia jardineiDesmophyllum pertusumFimbriaphyllia ancoraLophelia pertusaCladopsammia gracilisDendrophyllia cribrosaDuncanopsammia axifugaTubastraea coccineaTurbinaria reniformisGalaxea fascicularisPodabacia crustaceaMicromussa lordhowensisDendrogyra cylindrusMeandrina meandritesCyphastrea salaeEchinopora horridaOrbicella faveolataOrbicella franksiPlatygyra sinensisColpophyllia natansOculina arbusculaOculina patagonicaMadracis auretenraMadracis senariaPocillopora acutaPocillopora damicornis
See all Hexacorallia species in the coverage matrix →

Availability shown here is recomputed from the live database every hour (last built 2026-09-22 16:36). If a data type is listed as unavailable for Isopora palifera, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.