Which species have which data? The matrix below covers all 325 cnidarian
species in CnidoSite × 15 data types. Cells that carry data link straight to
that module with the species already selected, and show how much data there is; a blank cell means the data type
is genuinely not available for that species in this release. Click a species name to open its
species portal, which lists every resource it has on one page. Sort by
species name or by
class.
Species per data type:Genome 325Gene models 145Function 148Gene family 149RNA-seq 185Co-expr. 31Single-cell 15Proteome 15Epigenome 15Metagenome 24Phenotype 69Paleo 71Mitogenome 167TE 3JBrowse 145× clear
Showing 71 species having Paleobiology (coverage rebuilt 2026-09-19)
| Species | Class | # | Genome | Gene models | Function | Gene family | RNA-seq | Co-expr. | Single-cell | Proteome | Epigenome | Metagenome | Phenotype | Paleo | Mitogenome | TE | JBrowse |
|---|
| Acropora abrotanoides | Hexacorallia | 2 | ✓ | · | · | · | · | · | · | · | · | · | · | 1 | · | · | · |
| Acropora acuminata | Hexacorallia | 6 | ✓ | 26,152 | ✓ | ✓ | · | · | · | · | · | · | · | 1 | · | · | ✓ |
| Acropora austera | Hexacorallia | 7 | ✓ | 52,944 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Acropora cervicornis | Hexacorallia | 10 | ✓ | 28,060 | ✓ | ✓ | 606 | · | · | · | 48 | 39 | · | 1 | 23 | · | ✓ |
| Acropora cytherea | Hexacorallia | 9 | ✓ | 27,328 | ✓ | ✓ | 1 | · | · | · | · | 5 | · | 1 | 20 | · | ✓ |
| Acropora digitifera | Hexacorallia | 10 | ✓ | 34,514 | ✓ | ✓ | 257 | ✓ | · | · | 1 | · | · | 1 | 19 | · | ✓ |
| Acropora florida | Hexacorallia | 7 | ✓ | 27,574 | ✓ | ✓ | · | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Acropora gemmifera | Hexacorallia | 8 | ✓ | 26,270 | ✓ | ✓ | 130 | ✓ | · | · | · | · | · | 1 | · | · | ✓ |
| Acropora glauca | Hexacorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | · | 1 | · | · | · |
| Acropora hemprichii | Hexacorallia | 7 | ✓ | 33,304 | ✓ | ✓ | 3 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Acropora hyacinthus | Hexacorallia | 10 | ✓ | 27,216 | ✓ | ✓ | 858 | ✓ | · | · | 8 | · | · | 1 | 19 | · | ✓ |
| Acropora intermedia | Hexacorallia | 8 | ✓ | 26,983 | ✓ | ✓ | 12 | · | · | · | · | · | · | 1 | 23 | · | ✓ |
| Acropora microphthalma | Hexacorallia | 8 | ✓ | 26,385 | ✓ | ✓ | 12 | · | · | · | · | · | · | 1 | 21 | · | ✓ |
| Acropora millepora | Hexacorallia | 11 | ✓ | 41,861 | ✓ | ✓ | 1,581 | ✓ | 2 | · | 15 | · | · | 1 | 22 | · | ✓ |
| Acropora muricata | Hexacorallia | 10 | ✓ | 27,410 | ✓ | ✓ | 101 | ✓ | 2 | · | · | · | · | 1 | 19 | · | ✓ |
| Acropora nasuta | Hexacorallia | 7 | ✓ | 27,380 | ✓ | ✓ | · | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Acropora palmata | Hexacorallia | 11 | ✓ | 34,127 | ✓ | ✓ | 802 | ✓ | · | · | 32 | 375 | · | 1 | 18 | · | ✓ |
| Acropora pulchra | Hexacorallia | 8 | ✓ | 48,183 | ✓ | ✓ | 12 | · | · | · | · | · | · | 1 | 22 | · | ✓ |
| Acropora selago | Hexacorallia | 9 | ✓ | 27,037 | ✓ | ✓ | 24 | ✓ | · | · | 4 | · | · | 1 | · | · | ✓ |
| Acropora spicifera | Hexacorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | · | 1 | · | · | · |
| Acropora tenuis | Hexacorallia | 9 | ✓ | 27,237 | ✓ | ✓ | 1,306 | ✓ | · | · | · | · | · | 1 | 19 | · | ✓ |
| Acropora yongei | Hexacorallia | 7 | ✓ | 27,453 | ✓ | ✓ | · | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Agaricia agaricites | Hexacorallia | 3 | ✓ | · | · | · | 2 | · | · | · | · | · | · | 1 | · | · | · |
| Agaricia lamarcki | Hexacorallia | 3 | ✓ | · | · | · | 2 | · | · | · | · | · | · | 1 | · | · | · |
| Astreopora myriophthalma | Hexacorallia | 8 | ✓ | 38,293 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Catalaphyllia jardinei | Hexacorallia | 7 | ✓ | 59,755 | ✓ | ✓ | 13 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Cladocora caespitosa | Hexacorallia | 2 | ✓ | · | · | · | · | · | · | · | · | · | · | 1 | · | · | · |
| Coelastrea aspera | Hexacorallia | 2 | ✓ | · | · | · | · | · | · | · | · | · | · | 1 | · | · | · |
| Colpophyllia natans | Hexacorallia | 9 | ✓ | 36,154 | ✓ | ✓ | 16 | · | · | · | · | 3 | · | 1 | 19 | · | ✓ |
| Dendrogyra cylindrus | Hexacorallia | 8 | ✓ | 42,998 | ✓ | ✓ | 1 | · | · | · | · | 3 | · | 1 | · | · | ✓ |
| Diploria labyrinthiformis | Hexacorallia | 4 | ✓ | · | · | · | 2 | · | · | · | · | · | · | 1 | 21 | · | · |
| Duncanopsammia axifuga | Hexacorallia | 7 | ✓ | 52,571 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Fimbriaphyllia ancora | Hexacorallia | 9 | ✓ | 27,538 | ✓ | ✓ | 41 | ✓ | · | · | · | · | · | 1 | 22 | · | ✓ |
| Galaxea fascicularis | Hexacorallia | 10 | ✓ | 22,419 | ✓ | ✓ | 79 | ✓ | · | · | · | 72 | · | 1 | 25 | · | ✓ |
| Isopora palifera | Hexacorallia | 3 | ✓ | · | · | · | · | · | · | · | · | · | · | 1 | 19 | · | · |
| Leptoseris scabra | Hexacorallia | 6 | ✓ | 35,742 | ✓ | ✓ | · | · | · | · | · | · | · | 1 | · | · | ✓ |
| Madracis auretenra | Hexacorallia | 8 | ✓ | 36,768 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Meandrina meandrites | Hexacorallia | 7 | ✓ | 42,968 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Montipora cactus | Hexacorallia | 8 | ✓ | 55,029 | ✓ | ✓ | 3 | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Montipora capitata | Hexacorallia | 10 | ✓ | 36,692 | ✓ | ✓ | 201 | ✓ | · | · | 3 | 80 | · | 1 | · | · | ✓ |
| Montipora capricornis | Hexacorallia | 9 | ✓ | 46,183 | ✓ | ✓ | 37 | ✓ | 1 | · | · | · | · | 1 | · | · | ✓ |
| Montipora efflorescens | Hexacorallia | 8 | ✓ | 48,795 | ✓ | ✓ | 7 | · | · | · | · | · | · | 1 | 23 | · | ✓ |
| Montipora foliosa | Hexacorallia | 9 | ✓ | 46,766 | ✓ | ✓ | 36 | ✓ | 1 | · | · | · | · | 1 | · | · | ✓ |
| Montipora grisea | Hexacorallia | 6 | ✓ | 41,982 | ✓ | ✓ | · | · | · | · | · | · | · | 1 | · | · | ✓ |
| Montipora palawanensis | Hexacorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | · | 1 | · | · | · |
| Orbicella annularis | Hexacorallia | 5 | ✓ | · | · | · | 15 | · | · | 10 | · | · | · | 1 | 19 | · | · |
| Orbicella faveolata | Hexacorallia | 11 | ✓ | 32,588 | ✓ | ✓ | 696 | ✓ | 1 | · | · | 76 | · | 1 | 22 | · | ✓ |
| Orbicella franksi | Hexacorallia | 8 | ✓ | 38,071 | ✓ | ✓ | 65 | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Pachyseris speciosa | Hexacorallia | 8 | ✓ | 39,161 | ✓ | ✓ | 1 | · | · | · | · | 16 | · | 1 | · | · | ✓ |
| Pavona decussata | Hexacorallia | 4 | ✓ | · | · | · | 58 | · | · | · | · | · | · | 1 | 19 | · | · |
| Platygyra daedalea | Hexacorallia | 3 | ✓ | · | · | · | · | · | · | · | · | · | · | 1 | 22 | · | · |
| Platygyra sinensis | Hexacorallia | 7 | ✓ | 62,639 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Pocillopora damicornis | Hexacorallia | 10 | ✓ | 25,423 | ✓ | ✓ | 637 | · | · | · | 28 | 60 | · | 1 | 22 | · | ✓ |
| Pocillopora verrucosa | Hexacorallia | 9 | ✓ | 37,407 | ✓ | ✓ | 8 | · | 1 | · | · | 4 | · | 1 | · | · | ✓ |
| Porites australiensis | Hexacorallia | 7 | ✓ | 35,911 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Porites compressa | Hexacorallia | 7 | ✓ | 44,131 | ✓ | ✓ | 15 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Porites cylindrica | Hexacorallia | 9 | ✓ | 37,612 | ✓ | ✓ | 13 | · | · | · | · | 12 | · | 1 | 25 | · | ✓ |
| Porites divaricata | Hexacorallia | 7 | ✓ | 31,269 | ✓ | ✓ | 2 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Porites evermanni | Hexacorallia | 6 | ✓ | 7,757 | ✓ | ✓ | · | · | · | · | · | · | · | 1 | · | · | ✓ |
| Porites lobata | Hexacorallia | 9 | ✓ | 63,853 | ✓ | ✓ | 101 | · | · | · | · | 45 | · | 1 | 25 | · | ✓ |
| Porites lutea | Hexacorallia | 9 | ✓ | 32,437 | ✓ | ✓ | 80 | · | · | · | · | 263 | · | 1 | 37 | · | ✓ |
| Porites rus | Hexacorallia | 8 | ✓ | 43,885 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | 37 | · | ✓ |
| Pseudodiploria clivosa | Hexacorallia | 3 | ✓ | · | · | · | 49 | · | · | · | · | · | · | 1 | · | · | · |
| Siderastrea radians | Hexacorallia | 9 | ✓ | 73,674 | ✓ | ✓ | 1 | · | · | · | · | 73 | · | 1 | 21 | · | ✓ |
| Siderastrea siderea | Hexacorallia | 9 | ✓ | 63,854 | ✓ | ✓ | 85 | ✓ | · | · | · | 32 | · | 1 | · | · | ✓ |
| Stephanocoenia intersepta | Hexacorallia | 8 | ✓ | 42,339 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | 23 | · | ✓ |
| Stylophora pistillata | Hexacorallia | 12 | ✓ | 23,946 | ✓ | ✓ | 362 | · | 2 | 2 | 12 | 256 | · | 1 | 24 | · | ✓ |
| Tubastraea coccinea | Hexacorallia | 8 | ✓ | 37,308 | ✓ | ✓ | 4 | · | · | · | · | · | · | 1 | 21 | · | ✓ |
| Turbinaria reniformis | Hexacorallia | 7 | ✓ | 28,961 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Millepora alcicornis | Hydrozoa | 7 | ✓ | 24,619 | ✓ | ✓ | 3 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Millepora dichotoma | Hydrozoa | 7 | ✓ | 46,838 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
How to read a cell. A number is the count of records of that data type held for the species (samples, peaks, occurrences, mitochondrial gene sets …) — columns: Gene models, RNA-seq, Single-cell, Proteome, Epigenome, Metagenome, Phenotype, Paleo, Mitogenome. A ✓ means the data type is present but is catalogued as a single resource rather than a set of countable records — columns: Genome, Function, Gene family, Co-expr., TE, JBrowse. A · means the data type is genuinely not available for that species in this release. Every populated cell is a link: it opens that module with the species already selected. Clicking a species name opens its species portal, which lists every resource it has on one page.
Reading the first two columns. Genome is set when the species has an assembly record (size, scaffold/contig N50, BUSCO, accession) — all 325 species have one. Gene models is set only when this database also carries the predicted gene set for that assembly, which is true for 145 species. A row whose count (#) is 1 therefore means “the assembly is catalogued here, but it has not been annotated in CnidoSite”, not “data are missing by mistake”. The matrix is rebuilt from the live database every hour; the same table is available as tab-separated text for scripted access.
