Which species have which data? The matrix below covers all 325 cnidarian
species in CnidoSite × 15 data types. Cells that carry data link straight to
that module with the species already selected, and show how much data there is; a blank cell means the data type
is genuinely not available for that species in this release. Click a species name to open its
species portal, which lists every resource it has on one page. Sort by
species name or by
class.
Species per data type:Genome 325Gene models 145Function 148Gene family 149RNA-seq 185Co-expr. 31Single-cell 15Proteome 15Epigenome 15Metagenome 24Phenotype 69Paleo 71Mitogenome 167TE 3JBrowse 145× clear
Showing 185 species having Bulk transcriptome · page 1 of 2 (coverage rebuilt 2026-09-18)
| Species | Class | # | Genome | Gene models | Function | Gene family | RNA-seq | Co-expr. | Single-cell | Proteome | Epigenome | Metagenome | Phenotype | Paleo | Mitogenome | TE | JBrowse |
|---|
| Alatina alata | Cubozoa | 6 | ✓ | · | ✓ | ✓ | 6 | · | · | · | · | · | 1 | · | 3 | · | · |
| Chironex yamaguchii | Cubozoa | 3 | ✓ | · | · | · | 4 | · | · | · | · | · | · | · | 1 | · | · |
| Morbakka virulenta | Cubozoa | 7 | ✓ | 28,984 | ✓ | ✓ | 2 | · | · | · | · | · | · | · | 1 | · | ✓ |
| Acropora austera | Hexacorallia | 7 | ✓ | 52,944 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Acropora cervicornis | Hexacorallia | 10 | ✓ | 28,060 | ✓ | ✓ | 606 | · | · | · | 48 | 39 | · | 1 | 23 | · | ✓ |
| Acropora cytherea | Hexacorallia | 9 | ✓ | 27,328 | ✓ | ✓ | 1 | · | · | · | · | 5 | · | 1 | 20 | · | ✓ |
| Acropora digitifera | Hexacorallia | 10 | ✓ | 34,514 | ✓ | ✓ | 257 | ✓ | · | · | 1 | · | · | 1 | 19 | · | ✓ |
| Acropora gemmifera | Hexacorallia | 8 | ✓ | 26,270 | ✓ | ✓ | 130 | ✓ | · | · | · | · | · | 1 | · | · | ✓ |
| Acropora glauca | Hexacorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | · | 1 | · | · | · |
| Acropora hemprichii | Hexacorallia | 7 | ✓ | 33,304 | ✓ | ✓ | 3 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Acropora hyacinthus | Hexacorallia | 10 | ✓ | 27,216 | ✓ | ✓ | 858 | ✓ | · | · | 8 | · | · | 1 | 19 | · | ✓ |
| Acropora intermedia | Hexacorallia | 8 | ✓ | 26,983 | ✓ | ✓ | 12 | · | · | · | · | · | · | 1 | 23 | · | ✓ |
| Acropora loripes | Hexacorallia | 6 | ✓ | 28,198 | ✓ | ✓ | 2 | · | · | · | · | · | · | · | · | · | ✓ |
| Acropora microphthalma | Hexacorallia | 8 | ✓ | 26,385 | ✓ | ✓ | 12 | · | · | · | · | · | · | 1 | 21 | · | ✓ |
| Acropora millepora | Hexacorallia | 11 | ✓ | 41,861 | ✓ | ✓ | 1,581 | ✓ | 2 | · | 15 | · | · | 1 | 22 | · | ✓ |
| Acropora muricata | Hexacorallia | 10 | ✓ | 27,410 | ✓ | ✓ | 101 | ✓ | 2 | · | · | · | · | 1 | 19 | · | ✓ |
| Acropora palmata | Hexacorallia | 11 | ✓ | 34,127 | ✓ | ✓ | 802 | ✓ | · | · | 32 | 375 | · | 1 | 18 | · | ✓ |
| Acropora pulchra | Hexacorallia | 8 | ✓ | 48,183 | ✓ | ✓ | 12 | · | · | · | · | · | · | 1 | 22 | · | ✓ |
| Acropora selago | Hexacorallia | 9 | ✓ | 27,037 | ✓ | ✓ | 24 | ✓ | · | · | 4 | · | · | 1 | · | · | ✓ |
| Acropora spathulata | Hexacorallia | 6 | ✓ | 52,712 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | · | · | ✓ |
| Acropora spicifera | Hexacorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | · | 1 | · | · | · |
| Acropora tenuis | Hexacorallia | 9 | ✓ | 27,237 | ✓ | ✓ | 1,306 | ✓ | · | · | · | · | · | 1 | 19 | · | ✓ |
| Actinernus sp. WN-2022 | Hexacorallia | 8 | ✓ | 44,971 | ✓ | ✓ | 4 | · | · | · | · | · | · | · | 21 | ✓ | ✓ |
| Actinia equina | Hexacorallia | 9 | ✓ | 55,608 | ✓ | ✓ | 9 | · | · | · | 5 | 7 | · | · | 26 | · | ✓ |
| Actinia mediterranea | Hexacorallia | 7 | ✓ | 79,829 | ✓ | ✓ | 4 | · | · | · | · | · | · | · | 25 | · | ✓ |
| Actinia tenebrosa | Hexacorallia | 9 | ✓ | 27,038 | ✓ | ✓ | 18 | ✓ | · | 1 | · | · | · | · | 25 | · | ✓ |
| Actinoscyphia liui | Hexacorallia | 6 | ✓ | 33,127 | ✓ | ✓ | 6 | · | · | · | · | · | · | · | · | · | ✓ |
| Agaricia agaricites | Hexacorallia | 3 | ✓ | · | · | · | 2 | · | · | · | · | · | · | 1 | · | · | · |
| Agaricia lamarcki | Hexacorallia | 3 | ✓ | · | · | · | 2 | · | · | · | · | · | · | 1 | · | · | · |
| Alvinactis idsseensis sp. Nov. | Hexacorallia | 7 | ✓ | 31,961 | ✓ | ✓ | 3 | · | · | · | · | · | · | · | · | ✓ | ✓ |
| Anemonia sulcata | Hexacorallia | 3 | ✓ | · | · | · | 4 | · | · | · | · | · | · | · | 17 | · | · |
| Anemonia viridis | Hexacorallia | 3 | ✓ | · | · | · | 28 | · | · | · | · | · | · | · | 27 | · | · |
| Anthopleura artemisia | Hexacorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | · | · | 25 | · | · |
| Anthopleura elegantissima | Hexacorallia | 2 | ✓ | · | · | · | 15 | · | · | · | · | · | · | · | · | · | · |
| Anthopleura sola | Hexacorallia | 3 | ✓ | · | · | · | 3 | · | · | · | · | · | · | · | 21 | · | · |
| Anthopleura xanthogrammica | Hexacorallia | 7 | ✓ | 39,672 | ✓ | ✓ | 4 | · | · | · | · | · | · | · | 25 | · | ✓ |
| Astrangia poculata | Hexacorallia | 7 | ✓ | 48,185 | ✓ | ✓ | 125 | ✓ | · | · | · | · | · | · | · | · | ✓ |
| Astreopora myriophthalma | Hexacorallia | 8 | ✓ | 76,585 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Aulactinia verrucosa | Hexacorallia | 2 | ✓ | · | · | · | 1 | · | · | · | · | · | · | · | · | · | · |
| Blastomussa wellsi | Hexacorallia | 6 | ✓ | 67,731 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | · | · | ✓ |
| Catalaphyllia jardinei | Hexacorallia | 7 | ✓ | 59,755 | ✓ | ✓ | 13 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Caulastraea furcata | Hexacorallia | 2 | ✓ | · | · | · | 1 | · | · | · | · | · | · | · | · | · | · |
| Cladopsammia gracilis | Hexacorallia | 6 | ✓ | 62,321 | ✓ | ✓ | 32 | · | · | · | · | · | · | · | · | · | ✓ |
| Colpophyllia natans | Hexacorallia | 9 | ✓ | 36,154 | ✓ | ✓ | 16 | · | · | · | · | 3 | · | 1 | 19 | · | ✓ |
| Condylactis gigantea | Hexacorallia | 7 | ✓ | 36,079 | ✓ | ✓ | 8 | · | · | · | · | · | · | · | 25 | · | ✓ |
| Cryptodendrum adhaesivum | Hexacorallia | 2 | ✓ | · | · | · | 3 | · | · | · | · | · | · | · | · | · | · |
| Cyphastrea salae | Hexacorallia | 6 | ✓ | 38,235 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | · | · | ✓ |
| Dendrogyra cylindrus | Hexacorallia | 8 | ✓ | 42,998 | ✓ | ✓ | 1 | · | · | · | · | 3 | · | 1 | · | · | ✓ |
| Dendrophyllia cribrosa | Hexacorallia | 7 | ✓ | 93,973 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | 21 | · | ✓ |
| Desmophyllum pertusum | Hexacorallia | 7 | ✓ | 37,485 | ✓ | ✓ | 110 | · | · | · | · | · | · | · | 22 | · | ✓ |
| Diadumene leucolena | Hexacorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | · | · | 25 | · | · |
| Diadumene lineata | Hexacorallia | 7 | ✓ | 30,937 | ✓ | ✓ | 4 | · | · | · | · | · | · | · | 26 | · | ✓ |
| Diploria labyrinthiformis | Hexacorallia | 4 | ✓ | · | · | · | 2 | · | · | · | · | · | · | 1 | 21 | · | · |
| Duncanopsammia axifuga | Hexacorallia | 7 | ✓ | 52,571 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Echinopora horrida | Hexacorallia | 6 | ✓ | 47,502 | ✓ | ✓ | 2 | · | · | · | · | · | · | · | · | · | ✓ |
| Edwardsia elegans | Hexacorallia | 7 | ✓ | 49,838 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | 23 | · | ✓ |
| Entacmaea quadricolor | Hexacorallia | 3 | ✓ | · | · | · | 52 | · | · | · | · | · | · | · | 17 | · | · |
| Exaiptasia diaphana | Hexacorallia | 10 | ✓ | 26,043 | ✓ | ✓ | 479 | ✓ | · | 4 | 170 | · | · | · | 26 | · | ✓ |
| Fimbriaphyllia ancora | Hexacorallia | 9 | ✓ | 27,538 | ✓ | ✓ | 41 | ✓ | · | · | · | · | · | 1 | 22 | · | ✓ |
| Fimbriaphyllia paradivisa | Hexacorallia | 3 | ✓ | · | · | · | 178 | · | · | · | · | · | · | · | 22 | · | · |
| Galaxea fascicularis | Hexacorallia | 10 | ✓ | 22,419 | ✓ | ✓ | 79 | ✓ | · | · | · | 72 | · | 1 | 25 | · | ✓ |
| Heteractis aurora | Hexacorallia | 3 | ✓ | · | · | · | 6 | · | · | · | · | · | · | · | 17 | · | · |
| Heteractis doreensis | Hexacorallia | 3 | ✓ | · | · | · | 7 | · | · | · | · | · | · | · | 21 | · | · |
| Heteractis magnifica | Hexacorallia | 3 | ✓ | · | · | · | 7 | · | · | · | · | · | · | · | 21 | · | · |
| Lophelia pertusa | Hexacorallia | 7 | ✓ | 40,680 | ✓ | ✓ | 110 | ✓ | · | · | · | · | · | · | · | · | ✓ |
| Madracis auretenra | Hexacorallia | 8 | ✓ | 36,768 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Madracis senaria | Hexacorallia | 6 | ✓ | 42,578 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | · | · | ✓ |
| Meandrina meandrites | Hexacorallia | 7 | ✓ | 42,968 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Metridium senile | Hexacorallia | 7 | ✓ | 37,436 | ✓ | ✓ | 12 | · | · | · | · | · | · | · | 22 | · | ✓ |
| Micromussa lordhowensis | Hexacorallia | 6 | ✓ | 48,324 | ✓ | ✓ | 2 | · | · | · | · | · | · | · | · | · | ✓ |
| Montipora cactus | Hexacorallia | 8 | ✓ | 110,055 | ✓ | ✓ | 3 | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Montipora capitata | Hexacorallia | 10 | ✓ | 36,692 | ✓ | ✓ | 201 | ✓ | · | · | 3 | 80 | · | 1 | · | · | ✓ |
| Montipora capricornis | Hexacorallia | 9 | ✓ | 46,183 | ✓ | ✓ | 37 | ✓ | 1 | · | · | · | · | 1 | · | · | ✓ |
| Montipora efflorescens | Hexacorallia | 8 | ✓ | 48,795 | ✓ | ✓ | 7 | · | · | · | · | · | · | 1 | 23 | · | ✓ |
| Montipora foliosa | Hexacorallia | 9 | ✓ | 46,766 | ✓ | ✓ | 36 | ✓ | 1 | · | · | · | · | 1 | · | · | ✓ |
| Montipora palawanensis | Hexacorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | · | 1 | · | · | · |
| Nematostella vectensis | Hexacorallia | 11 | ✓ | 32,371 | ✓ | ✓ | 3,139 | ✓ | 11 | 3 | 194 | 80 | · | · | · | · | ✓ |
| Oculina arbuscula | Hexacorallia | 8 | ✓ | 43,352 | ✓ | ✓ | 14 | · | 2 | · | · | 10 | · | · | · | · | ✓ |
| Oculina patagonica | Hexacorallia | 8 | ✓ | 39,483 | ✓ | ✓ | 1 | · | 2 | · | · | · | · | · | 21 | · | ✓ |
| Orbicella annularis | Hexacorallia | 5 | ✓ | · | · | · | 15 | · | · | 10 | · | · | · | 1 | 19 | · | · |
| Orbicella faveolata | Hexacorallia | 11 | ✓ | 32,588 | ✓ | ✓ | 696 | ✓ | 1 | · | · | 76 | · | 1 | 22 | · | ✓ |
| Orbicella franksi | Hexacorallia | 8 | ✓ | 38,071 | ✓ | ✓ | 65 | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Pachyseris speciosa | Hexacorallia | 8 | ✓ | 39,161 | ✓ | ✓ | 1 | · | · | · | · | 16 | · | 1 | · | · | ✓ |
| Palythoa caribaeorum | Hexacorallia | 3 | ✓ | · | · | · | 3 | · | · | · | · | · | · | · | 23 | · | · |
| Paranemonia cinerea | Hexacorallia | 2 | ✓ | · | · | · | 1 | · | · | · | · | · | · | · | · | · | · |
| Pavona decussata | Hexacorallia | 4 | ✓ | · | · | · | 58 | · | · | · | · | · | · | 1 | 19 | · | · |
| Platygyra sinensis | Hexacorallia | 7 | ✓ | 62,639 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Plumapathes pennacea | Hexacorallia | 6 | ✓ | 43,877 | ✓ | ✓ | 3 | · | · | · | · | · | · | · | · | · | ✓ |
| Pocillopora acuta | Hexacorallia | 6 | ✓ | 33,731 | ✓ | ✓ | 6 | · | · | · | · | · | · | · | · | · | ✓ |
| Pocillopora damicornis | Hexacorallia | 10 | ✓ | 25,423 | ✓ | ✓ | 637 | · | · | · | 28 | 60 | · | 1 | 22 | · | ✓ |
| Pocillopora grandis | Hexacorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | · | · | 19 | · | · |
| Pocillopora verrucosa | Hexacorallia | 9 | ✓ | 37,407 | ✓ | ✓ | 8 | · | 1 | · | · | 4 | · | 1 | · | · | ✓ |
| Podabacia crustacea | Hexacorallia | 7 | ✓ | 29,343 | ✓ | ✓ | 3 | · | · | · | · | · | · | · | 22 | · | ✓ |
| Porites australiensis | Hexacorallia | 7 | ✓ | 35,911 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Porites compressa | Hexacorallia | 7 | ✓ | 44,131 | ✓ | ✓ | 15 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Porites cylindrica | Hexacorallia | 9 | ✓ | 37,612 | ✓ | ✓ | 13 | · | · | · | · | 12 | · | 1 | 25 | · | ✓ |
| Porites divaricata | Hexacorallia | 7 | ✓ | 31,269 | ✓ | ✓ | 2 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Porites lobata | Hexacorallia | 9 | ✓ | 63,853 | ✓ | ✓ | 101 | · | · | · | · | 45 | · | 1 | 25 | · | ✓ |
| Porites lutea | Hexacorallia | 9 | ✓ | 32,437 | ✓ | ✓ | 80 | · | · | · | · | 263 | · | 1 | 37 | · | ✓ |
| Porites rus | Hexacorallia | 8 | ✓ | 43,885 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | 37 | · | ✓ |
How to read a cell. A number is the count of records of that data type held for the species (samples, peaks, occurrences, mitochondrial gene sets …) — columns: Gene models, RNA-seq, Single-cell, Proteome, Epigenome, Metagenome, Phenotype, Paleo, Mitogenome. A ✓ means the data type is present but is catalogued as a single resource rather than a set of countable records — columns: Genome, Function, Gene family, Co-expr., TE, JBrowse. A · means the data type is genuinely not available for that species in this release. Every populated cell is a link: it opens that module with the species already selected. Clicking a species name opens its species portal, which lists every resource it has on one page.
Reading the first two columns. Genome is set when the species has an assembly record (size, scaffold/contig N50, BUSCO, accession) — all 325 species have one. Gene models is set only when this database also carries the predicted gene set for that assembly, which is true for 145 species. A row whose count (#) is 1 therefore means “the assembly is catalogued here, but it has not been annotated in CnidoSite”, not “data are missing by mistake”. The matrix is rebuilt from the live database every hour; the same table is available as tab-separated text for scripted access.
