Species Overview — Nematostella vectensis

CnidoSite currently holds 11 of the 15 data types it covers for Nematostella vectensis. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.

OUT is not one of the 326 species currently registered in CnidoSite. Showing Nematostella vectensis instead. You can also browse the full coverage matrix or search by name there.

Data available for this species

Genome assembly

✓ available

Assembled genome (size, level, N50, BUSCO)

Open Genome →
Full assembly record · BUSCO · TFs / Ubs · Pan-geneset

Gene annotation

✓ 32,371 records

Predicted gene models with CDS / transcript / protein sequences

Open Gene models →

Functional annotation

✓ available

InterPro, Pfam, PANTHER, GO and KEGG assignments

Open Function →
InterPro by gene ID · Pfam by gene ID · GO by gene ID · KEGG by gene ID

Gene family (orthogroup)

✓ available

OrthoFinder orthogroups and TF / ubiquitin families

Open Gene family →
Orthogroup browser

Bulk transcriptome

✓ 3,139 records

RNA-seq samples with expression values (TPM)

Open Transcriptome →
Dynamic Expression View

Co-expression network

✓ available

Positive / negative co-expression edges

Open Co-expression →

Single-cell

✓ 11 records

scRNA-seq datasets, cell atlas and marker genes

Open Single-cell →
Cell Atlas · Cell Marker · Gene Expression

Proteome

✓ 3 records

Mass-spectrometry proteomics samples

Open Proteome →
Proteomic Analysis

Epigenome

✓ 194 records

DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq

Open Epigenome →
DNA Methylation · ATAC-seq · DNase-seq (DHS) · ChIP-seq

Metagenome

✓ 80 records

Host-associated metagenomic samples

Open Metagenome →
MAGs Catalog

Phenotype

— not available

Trait measurements with geo-referencing

Open Phenotype anyway →

Paleobiology

— not available

Fossil occurrences and stratigraphic records

Open Paleobiology anyway →

Mitogenome

— not available

Mitochondrial genome record and gene annotations

Open Mitogenome anyway →

Transposable elements

— not available

Repeat annotation of assembled genomes

Open TE anyway →

Genome browser

✓ available

Interactive JBrowse track for the assembly

Open JBrowse →

Assembly record

Assembly

Assembly name
jaNemVect1.1
Assembly level
Chromosome
Assembly accession
GCF_932526225.1
Assembled by
WELLCOME SANGER INSTITUTE
Year
2022

Genome statistics

Genome size
256.94 Mb
GC content
40.5%
Scaffolds
47
Scaffold N50
17.87 Mb
Contigs
223
Contig N50
2.93 Mb
Chromosomes
15

Annotation

BUSCO
Complete, single-copy 98.7%Complete, duplicated 0.6%Fragmented 0.2%Missing 0.6%
Protein-coding genes
19,231
Proteins
38,762

Identifiers

WGS accession
CAKOAW01
BioProject
PRJEB50792

Reference

Reference
The genome sequence of the starlet sea anemone, Nematostella vectensis (Stephenson, 1935) Wellcome Open Res [link]

Other Hexacorallia species

Actinernus sp. WN-2022Actinia equinaActinia mediterraneaActinia tenebrosaAnthopleura xanthogrammicaCondylactis giganteaParacondylactis sinensisActinoscyphia liuiAlvinactis idsseensis sp. Nov.Actinostola sp. cb2023Exaiptasia diaphanaDiadumene lineataEdwardsia elegansNematostella vectensisScolanthus callimorphusParaphelliactis xishaensis sp. nov.Telmatactis stephensoniMetridium senilePlumapathes pennaceaRhodactis osculiferaRicordea floridaAcropora acuminataAcropora austeraAcropora awiAcropora cervicornisAcropora cythereaAcropora digitiferaAcropora echinataAcropora floridaAcropora gemmiferaAcropora hemprichiiAcropora hyacinthusAcropora intermediaAcropora loripesAcropora microphthalmaAcropora milleporaAcropora muricataAcropora nasutaAcropora palmataAcropora pulchraAcropora selagoAcropora spathulataAcropora tenuisAcropora yongeiAstreopora myriophthalmaMontipora cactusMontipora capitataMontipora capricornisMontipora efflorescensMontipora foliosaMontipora griseaLeptoseris scabraPachyseris speciosaStephanocoenia interseptaCatalaphyllia jardineiDesmophyllum pertusumFimbriaphyllia ancoraLophelia pertusaCladopsammia gracilisDendrophyllia cribrosaDuncanopsammia axifugaTubastraea coccineaTurbinaria reniformisGalaxea fascicularisPodabacia crustaceaMicromussa lordhowensisDendrogyra cylindrusMeandrina meandritesCyphastrea salaeEchinopora horridaOrbicella faveolataOrbicella franksiPlatygyra sinensisColpophyllia natansOculina arbusculaOculina patagonicaMadracis auretenraMadracis senariaPocillopora acutaPocillopora damicornis
See all Hexacorallia species in the coverage matrix →

Availability shown here is recomputed from the live database every hour (last built 2026-09-23 15:57). If a data type is listed as unavailable for Nematostella vectensis, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.

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