Which species have which data? The matrix below covers all 325 cnidarian
species in CnidoSite × 15 data types. Cells that carry data link straight to
that module with the species already selected, and show how much data there is; a blank cell means the data type
is genuinely not available for that species in this release. Click a species name to open its
species portal, which lists every resource it has on one page. Sort by
species name or by
class.
Species per data type:Genome 325Gene models 145Function 148Gene family 149RNA-seq 185Co-expr. 31Single-cell 15Proteome 15Epigenome 15Metagenome 24Phenotype 69Paleo 71Mitogenome 167TE 3JBrowse 145× clear
Showing 145 species having Genome browser · page 2 of 2 (coverage rebuilt 2026-09-19)
| Species | Class | # | Genome | Gene models | Function | Gene family | RNA-seq | Co-expr. | Single-cell | Proteome | Epigenome | Metagenome | Phenotype | Paleo | Mitogenome | TE | JBrowse |
|---|
| Bougainvillia cf. muscus | Hydrozoa | 5 | ✓ | 46,432 | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Candelabrum cocksii | Hydrozoa | 6 | ✓ | 28,911 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | · | · | ✓ |
| Clytia hemisphaerica | Hydrozoa | 10 | ✓ | 27,000 | ✓ | ✓ | 88 | ✓ | 1 | · | · | · | 6 | · | 21 | · | ✓ |
| Hydra oligactis | Hydrozoa | 6 | ✓ | 63,778 | ✓ | ✓ | · | · | · | · | · | · | · | · | 21 | · | ✓ |
| Hydra viridissima | Hydrozoa | 7 | ✓ | 27,914 | ✓ | ✓ | 29 | ✓ | · | · | · | · | · | · | · | · | ✓ |
| Hydra vulgaris | Hydrozoa | 12 | ✓ | 33,389 | ✓ | ✓ | 1,256 | ✓ | 2 | 1 | 175 | 40 | · | · | 11 | · | ✓ |
| Hydractinia echinata | Hydrozoa | 5 | ✓ | 56,916 | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Hydractinia symbiolongicarpus | Hydrozoa | 9 | ✓ | 25,826 | ✓ | ✓ | 161 | ✓ | 3 | 1 | · | · | · | · | · | · | ✓ |
| Millepora alcicornis | Hydrozoa | 7 | ✓ | 24,619 | ✓ | ✓ | 3 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Millepora complanata | Hydrozoa | 8 | ✓ | 40,579 | ✓ | ✓ | 9 | · | · | 1 | · | 3 | · | · | · | · | ✓ |
| Millepora dichotoma | Hydrozoa | 7 | ✓ | 46,838 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Nanomia septata | Hydrozoa | 5 | ✓ | 26,324 | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Turritopsis dohrnii | Hydrozoa | 7 | ✓ | 23,315 | ✓ | ✓ | 91 | · | · | · | · | · | · | · | 21 | · | ✓ |
| Turritopsis rubra | Hydrozoa | 7 | ✓ | 21,773 | ✓ | ✓ | 8 | · | 1 | · | · | · | · | · | · | · | ✓ |
| Henneguya salminicola | Myxozoa | 7 | ✓ | 8,188 | ✓ | ✓ | 1 | · | · | · | 1 | · | · | · | · | · | ✓ |
| Myxobolus honghuensis | Myxozoa | 6 | ✓ | 15,434 | ✓ | ✓ | · | · | · | 2 | · | · | · | · | · | · | ✓ |
| Myxobolus squamalis | Myxozoa | 7 | ✓ | 5,724 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | 19 | · | ✓ |
| Thelohanellus kitauei | Myxozoa | 7 | ✓ | 15,021 | ✓ | ✓ | 3 | · | · | 2 | · | · | · | · | · | · | ✓ |
| Callogorgia gracilis | Octocorallia | 7 | ✓ | 31,504 | ✓ | ✓ | 1 | · | · | · | · | · | 88 | · | · | · | ✓ |
| Chrysogorgia sp. JL179-B06 | Octocorallia | 6 | ✓ | 52,330 | ✓ | ✓ | · | · | · | · | · | · | · | · | 20 | · | ✓ |
| Dendronephthya gigantea | Octocorallia | 8 | ✓ | 28,742 | ✓ | ✓ | 3 | · | · | · | · | · | 88 | · | 20 | · | ✓ |
| Eunicella cavolini | Octocorallia | 8 | ✓ | 49,607 | ✓ | ✓ | 15 | · | · | · | · | · | 179 | · | 20 | · | ✓ |
| Eunicella verrucosa | Octocorallia | 9 | ✓ | 44,534 | ✓ | ✓ | 34 | ✓ | · | · | · | · | 162 | · | 18 | · | ✓ |
| Heliopora coerulea | Octocorallia | 9 | ✓ | 52,918 | ✓ | ✓ | 44 | ✓ | · | · | · | · | 131 | · | 20 | · | ✓ |
| Hemicorallium imperiale | Octocorallia | 8 | ✓ | 24,708 | ✓ | ✓ | 2 | · | · | · | · | · | 37 | · | 17 | · | ✓ |
| Leptogorgia sarmentosa | Octocorallia | 8 | ✓ | 39,902 | ✓ | ✓ | 13 | · | · | · | · | · | 224 | · | 20 | · | ✓ |
| Muricea muricata | Octocorallia | 7 | ✓ | 55,340 | ✓ | ✓ | 2 | · | · | · | · | · | 94 | · | · | · | ✓ |
| Paragorgia papillata | Octocorallia | 8 | ✓ | 41,724 | ✓ | ✓ | 1 | · | · | · | · | · | 37 | · | 18 | · | ✓ |
| Paramuricea clavata | Octocorallia | 9 | ✓ | 25,295 | ✓ | ✓ | 50 | ✓ | · | · | · | · | 485 | · | 20 | · | ✓ |
| Pteroeides griseum | Octocorallia | 7 | ✓ | 36,725 | ✓ | ✓ | 2 | · | · | · | · | · | 90 | · | · | · | ✓ |
| Trachythela sp. YZ-2020 | Octocorallia | 6 | ✓ | 36,220 | ✓ | ✓ | · | · | · | · | · | · | · | · | 17 | · | ✓ |
| Xenia sp. Carnegie-2017 | Octocorallia | 5 | ✓ | 26,117 | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Aurelia aurita | Scyphozoa | 10 | ✓ | 38,009 | ✓ | ✓ | 98 | ✓ | · | · | · | 40 | 51 | · | 23 | · | ✓ |
| Aurelia aurita complex sp. Pacific | Scyphozoa | 7 | ✓ | 37,463 | ✓ | ✓ | 29 | ✓ | · | · | · | · | · | · | · | · | ✓ |
| Aurelia coerulea | Scyphozoa | 10 | ✓ | 26,778 | ✓ | ✓ | 96 | ✓ | 7 | · | · | 56 | · | · | 21 | · | ✓ |
| Aurelia sp. 4 Dawson et al 2005 | Scyphozoa | 6 | ✓ | 31,346 | ✓ | ✓ | · | · | · | · | · | · | · | · | 19 | · | ✓ |
| Cassiopea sp. PORT0000214 | Scyphozoa | 6 | ✓ | 26,012 | ✓ | ✓ | · | · | · | · | · | · | · | · | 23 | · | ✓ |
| Catostylus mosaicus | Scyphozoa | 7 | ✓ | 24,879 | ✓ | ✓ | 1 | · | · | · | · | · | 8 | · | · | · | ✓ |
| Chrysaora quinquecirrha | Scyphozoa | 8 | ✓ | 21,853 | ✓ | ✓ | 9 | · | · | · | · | · | 21 | · | 19 | · | ✓ |
| Mastigias papua | Scyphozoa | 7 | ✓ | 26,844 | ✓ | ✓ | 1 | · | · | · | · | · | 9 | · | · | · | ✓ |
| Nemopilema nomurai | Scyphozoa | 8 | ✓ | 18,405 | ✓ | ✓ | 9 | · | · | · | · | · | 13 | · | 29 | · | ✓ |
| Pelagia noctiluca | Scyphozoa | 8 | ✓ | 29,456 | ✓ | ✓ | 2 | · | · | · | · | · | 25 | · | 23 | · | ✓ |
| Rhopilema esculentum | Scyphozoa | 8 | ✓ | 21,478 | ✓ | ✓ | 30 | · | · | · | · | · | 13 | · | 27 | · | ✓ |
| Sanderia malayensis | Scyphozoa | 7 | ✓ | 32,431 | ✓ | ✓ | 14 | · | · | · | · | · | · | · | 21 | · | ✓ |
| Haliclystus octoradiatus | Staurozoa | 6 | ✓ | 21,283 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | · | · | ✓ |
How to read a cell. A number is the count of records of that data type held for the species (samples, peaks, occurrences, mitochondrial gene sets …) — columns: Gene models, RNA-seq, Single-cell, Proteome, Epigenome, Metagenome, Phenotype, Paleo, Mitogenome. A ✓ means the data type is present but is catalogued as a single resource rather than a set of countable records — columns: Genome, Function, Gene family, Co-expr., TE, JBrowse. A · means the data type is genuinely not available for that species in this release. Every populated cell is a link: it opens that module with the species already selected. Clicking a species name opens its species portal, which lists every resource it has on one page.
Reading the first two columns. Genome is set when the species has an assembly record (size, scaffold/contig N50, BUSCO, accession) — all 325 species have one. Gene models is set only when this database also carries the predicted gene set for that assembly, which is true for 145 species. A row whose count (#) is 1 therefore means “the assembly is catalogued here, but it has not been annotated in CnidoSite”, not “data are missing by mistake”. The matrix is rebuilt from the live database every hour; the same table is available as tab-separated text for scripted access.
