Which species have which data? The matrix below covers all 325 cnidarian
species in CnidoSite × 15 data types. Cells that carry data link straight to
that module with the species already selected, and show how much data there is; a blank cell means the data type
is genuinely not available for that species in this release. Click a species name to open its
species portal, which lists every resource it has on one page. Sort by
species name or by
class.
Species per data type:Genome 325Gene models 145Function 148Gene family 149RNA-seq 185Co-expr. 31Single-cell 15Proteome 15Epigenome 15Metagenome 24Phenotype 69Paleo 71Mitogenome 167TE 3JBrowse 145× clear
Showing 185 species having Bulk transcriptome · page 2 of 2 (coverage rebuilt 2026-09-19)
| Species | Class | # | Genome | Gene models | Function | Gene family | RNA-seq | Co-expr. | Single-cell | Proteome | Epigenome | Metagenome | Phenotype | Paleo | Mitogenome | TE | JBrowse |
|---|
| Pseudodiploria clivosa | Hexacorallia | 3 | ✓ | · | · | · | 49 | · | · | · | · | · | · | 1 | · | · | · |
| Radianthus crispa | Hexacorallia | 3 | ✓ | · | · | · | 16 | · | · | · | · | · | · | · | 21 | · | · |
| Rhodactis osculifera | Hexacorallia | 6 | ✓ | 35,021 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | · | · | ✓ |
| Ricordea florida | Hexacorallia | 7 | ✓ | 54,520 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | 21 | · | ✓ |
| Scolanthus callimorphus | Hexacorallia | 7 | ✓ | 24,595 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | 19 | · | ✓ |
| Siderastrea radians | Hexacorallia | 9 | ✓ | 73,674 | ✓ | ✓ | 1 | · | · | · | · | 73 | · | 1 | 21 | · | ✓ |
| Siderastrea siderea | Hexacorallia | 9 | ✓ | 63,854 | ✓ | ✓ | 85 | ✓ | · | · | · | 32 | · | 1 | · | · | ✓ |
| Stephanocoenia intersepta | Hexacorallia | 8 | ✓ | 42,339 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | 23 | · | ✓ |
| Stichodactyla haddoni | Hexacorallia | 3 | ✓ | · | · | · | 11 | · | · | · | · | · | · | · | 22 | · | · |
| Stichodactyla helianthus | Hexacorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | · | · | 21 | · | · |
| Stichodactyla mertensii | Hexacorallia | 3 | ✓ | · | · | · | 6 | · | · | · | · | · | · | · | 21 | · | · |
| Stylophora pistillata | Hexacorallia | 12 | ✓ | 23,946 | ✓ | ✓ | 362 | · | 2 | 2 | 12 | 256 | · | 1 | 24 | · | ✓ |
| Telmatactis stephensoni | Hexacorallia | 8 | ✓ | 52,425 | ✓ | ✓ | 18 | ✓ | · | 1 | · | · | · | · | · | · | ✓ |
| Tubastraea coccinea | Hexacorallia | 8 | ✓ | 37,308 | ✓ | ✓ | 4 | · | · | · | · | · | · | 1 | 21 | · | ✓ |
| Turbinaria reniformis | Hexacorallia | 7 | ✓ | 28,961 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Zoanthus sociatus | Hexacorallia | 3 | ✓ | · | · | · | 3 | · | · | · | · | · | · | · | 23 | · | · |
| Aegina citrea | Hydrozoa | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | 23 | · | · | · | · |
| Aequorea victoria | Hydrozoa | 3 | ✓ | · | · | · | 4 | · | · | · | · | · | 28 | · | · | · | · |
| Candelabrum cocksii | Hydrozoa | 6 | ✓ | 28,911 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | · | · | ✓ |
| Cladonema pacificum | Hydrozoa | 3 | ✓ | · | · | · | 15 | · | · | · | · | · | 1 | · | · | · | · |
| Cladonema radiatum | Hydrozoa | 4 | ✓ | · | · | · | 5 | · | · | · | · | · | 2 | · | 21 | · | · |
| Clytia hemisphaerica | Hydrozoa | 10 | ✓ | 27,000 | ✓ | ✓ | 88 | ✓ | 1 | · | · | · | 6 | · | 21 | · | ✓ |
| Craspedacusta sowerbii | Hydrozoa | 3 | ✓ | · | · | · | 2 | · | · | · | · | · | · | · | 23 | · | · |
| Ectopleura larynx | Hydrozoa | 2 | ✓ | · | · | · | 1 | · | · | · | · | · | · | · | · | · | · |
| Hydra viridissima | Hydrozoa | 7 | ✓ | 27,914 | ✓ | ✓ | 29 | ✓ | · | · | · | · | · | · | · | · | ✓ |
| Hydra vulgaris | Hydrozoa | 12 | ✓ | 33,389 | ✓ | ✓ | 1,256 | ✓ | 2 | 1 | 175 | 40 | · | · | 11 | · | ✓ |
| Hydractinia symbiolongicarpus | Hydrozoa | 9 | ✓ | 25,826 | ✓ | ✓ | 161 | ✓ | 3 | 1 | · | · | · | · | · | · | ✓ |
| Millepora alcicornis | Hydrozoa | 7 | ✓ | 24,619 | ✓ | ✓ | 3 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Millepora complanata | Hydrozoa | 8 | ✓ | 40,579 | ✓ | ✓ | 9 | · | · | 1 | · | 3 | · | · | · | · | ✓ |
| Millepora dichotoma | Hydrozoa | 7 | ✓ | 46,838 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Nanomia bijuga | Hydrozoa | 4 | ✓ | · | · | · | 53 | · | · | · | · | · | 22 | · | 20 | · | · |
| Physalia physalis | Hydrozoa | 4 | ✓ | · | · | · | 21 | · | · | · | · | · | 8 | · | 20 | · | · |
| Sarsia tubulosa | Hydrozoa | 3 | ✓ | · | · | · | 6 | · | · | · | · | · | 11 | · | · | · | · |
| Sertularella gayi | Hydrozoa | 2 | ✓ | · | · | · | 1 | · | · | · | · | · | · | · | · | · | · |
| Turritopsis dohrnii | Hydrozoa | 7 | ✓ | 23,315 | ✓ | ✓ | 91 | · | · | · | · | · | · | · | 21 | · | ✓ |
| Turritopsis rubra | Hydrozoa | 7 | ✓ | 21,773 | ✓ | ✓ | 8 | · | 1 | · | · | · | · | · | · | · | ✓ |
| Ceratonova shasta | Myxozoa | 3 | ✓ | · | · | · | 4 | · | · | 1 | · | · | · | · | · | · | · |
| Henneguya salminicola | Myxozoa | 7 | ✓ | 8,188 | ✓ | ✓ | 1 | · | · | · | 1 | · | · | · | · | · | ✓ |
| Kudoa iwatai | Myxozoa | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | · | · | 9 | · | · |
| Myxobolus squamalis | Myxozoa | 7 | ✓ | 5,724 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | 19 | · | ✓ |
| Thelohanellus kitauei | Myxozoa | 7 | ✓ | 15,021 | ✓ | ✓ | 3 | · | · | 2 | · | · | · | · | · | · | ✓ |
| Antillogorgia americana | Octocorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | 141 | · | · | · | · |
| Briareum asbestinum | Octocorallia | 4 | ✓ | · | · | · | 3 | · | · | · | · | · | 174 | · | 18 | · | · |
| Callogorgia gracilis | Octocorallia | 7 | ✓ | 31,504 | ✓ | ✓ | 1 | · | · | · | · | · | 88 | · | · | · | ✓ |
| Corallium rubrum | Octocorallia | 5 | ✓ | · | · | · | 184 | · | · | 1 | · | · | 944 | · | 18 | · | · |
| Dendronephthya gigantea | Octocorallia | 8 | ✓ | 28,742 | ✓ | ✓ | 3 | · | · | · | · | · | 88 | · | 20 | · | ✓ |
| Dichotella gemmacea | Octocorallia | 4 | ✓ | · | · | · | 1 | · | · | · | · | · | 94 | · | 20 | · | · |
| Eunicea clavigera | Octocorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | 111 | · | · | · | · |
| Eunicea knighti | Octocorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | 63 | · | · | · | · |
| Eunicella cavolini | Octocorallia | 8 | ✓ | 49,607 | ✓ | ✓ | 15 | · | · | · | · | · | 179 | · | 20 | · | ✓ |
| Eunicella verrucosa | Octocorallia | 9 | ✓ | 44,534 | ✓ | ✓ | 34 | ✓ | · | · | · | · | 162 | · | 18 | · | ✓ |
| Gorgonia ventalina | Octocorallia | 3 | ✓ | · | · | · | 15 | · | · | · | · | · | 297 | · | · | · | · |
| Heliopora coerulea | Octocorallia | 9 | ✓ | 52,918 | ✓ | ✓ | 44 | ✓ | · | · | · | · | 131 | · | 20 | · | ✓ |
| Hemicorallium imperiale | Octocorallia | 8 | ✓ | 24,708 | ✓ | ✓ | 2 | · | · | · | · | · | 37 | · | 17 | · | ✓ |
| Leptogorgia sarmentosa | Octocorallia | 8 | ✓ | 39,902 | ✓ | ✓ | 13 | · | · | · | · | · | 224 | · | 20 | · | ✓ |
| Muricea muricata | Octocorallia | 7 | ✓ | 55,340 | ✓ | ✓ | 2 | · | · | · | · | · | 94 | · | · | · | ✓ |
| Paragorgia papillata | Octocorallia | 8 | ✓ | 41,724 | ✓ | ✓ | 1 | · | · | · | · | · | 37 | · | 18 | · | ✓ |
| Paramuricea biscaya | Octocorallia | 3 | ✓ | · | · | · | 5 | · | · | · | · | · | 77 | · | · | · | · |
| Paramuricea clavata | Octocorallia | 9 | ✓ | 25,295 | ✓ | ✓ | 50 | ✓ | · | · | · | · | 485 | · | 20 | · | ✓ |
| Pteroeides griseum | Octocorallia | 7 | ✓ | 36,725 | ✓ | ✓ | 2 | · | · | · | · | · | 90 | · | · | · | ✓ |
| Pterogorgia guadalupensis | Octocorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | 45 | · | · | · | · |
| Renilla koellikeri | Octocorallia | 3 | ✓ | · | · | · | 2 | · | · | · | · | · | 38 | · | · | · | · |
| Renilla reniformis | Octocorallia | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | 100 | · | · | · | · |
| Stylatula elongata | Octocorallia | 4 | ✓ | · | · | · | 1 | · | · | · | · | · | 38 | · | 20 | · | · |
| Aurelia aurita | Scyphozoa | 10 | ✓ | 38,009 | ✓ | ✓ | 98 | ✓ | · | · | · | 40 | 51 | · | 23 | · | ✓ |
| Aurelia aurita complex sp. Pacific | Scyphozoa | 7 | ✓ | 37,463 | ✓ | ✓ | 29 | ✓ | · | · | · | · | · | · | · | · | ✓ |
| Aurelia coerulea | Scyphozoa | 10 | ✓ | 26,778 | ✓ | ✓ | 96 | ✓ | 7 | · | · | 56 | · | · | 21 | · | ✓ |
| Cassiopea andromeda | Scyphozoa | 3 | ✓ | · | · | · | 2 | · | · | · | · | · | 5 | · | · | · | · |
| Cassiopea xamachana | Scyphozoa | 6 | ✓ | · | ✓ | ✓ | 63 | · | · | · | · | · | 2 | · | 23 | · | · |
| Catostylus mosaicus | Scyphozoa | 7 | ✓ | 24,879 | ✓ | ✓ | 1 | · | · | · | · | · | 8 | · | · | · | ✓ |
| Chrysaora achlyos | Scyphozoa | 4 | ✓ | · | · | · | 3 | · | · | · | · | · | 1 | · | 23 | · | · |
| Chrysaora fuscescens | Scyphozoa | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | 17 | · | · | · | · |
| Chrysaora quinquecirrha | Scyphozoa | 8 | ✓ | 21,853 | ✓ | ✓ | 9 | · | · | · | · | · | 21 | · | 19 | · | ✓ |
| Mastigias albipunctata | Scyphozoa | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | · | · | 23 | · | · |
| Mastigias papua | Scyphozoa | 7 | ✓ | 26,844 | ✓ | ✓ | 1 | · | · | · | · | · | 9 | · | · | · | ✓ |
| Nausithoe racemosa | Scyphozoa | 2 | ✓ | · | · | · | 1 | · | · | · | · | · | · | · | · | · | · |
| Nemopilema nomurai | Scyphozoa | 8 | ✓ | 18,405 | ✓ | ✓ | 9 | · | · | · | · | · | 13 | · | 29 | · | ✓ |
| Pelagia noctiluca | Scyphozoa | 8 | ✓ | 29,456 | ✓ | ✓ | 2 | · | · | · | · | · | 25 | · | 23 | · | ✓ |
| Phyllorhiza punctata | Scyphozoa | 5 | ✓ | · | · | · | 1 | · | · | 1 | · | · | 8 | · | 23 | · | · |
| Pseudorhiza aurosa | Scyphozoa | 2 | ✓ | · | · | · | 1 | · | · | · | · | · | · | · | · | · | · |
| Rhopilema esculentum | Scyphozoa | 8 | ✓ | 21,478 | ✓ | ✓ | 30 | · | · | · | · | · | 13 | · | 27 | · | ✓ |
| Sanderia malayensis | Scyphozoa | 7 | ✓ | 32,431 | ✓ | ✓ | 14 | · | · | · | · | · | · | · | 21 | · | ✓ |
| Stomolophus meleagris | Scyphozoa | 3 | ✓ | · | · | · | 1 | · | · | · | · | · | 12 | · | · | · | · |
| Calvadosia cruxmelitensis | Staurozoa | 5 | ✓ | · | ✓ | ✓ | 3 | · | · | 1 | · | · | · | · | · | · | · |
| Haliclystus octoradiatus | Staurozoa | 6 | ✓ | 21,283 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | · | · | ✓ |
How to read a cell. A number is the count of records of that data type held for the species (samples, peaks, occurrences, mitochondrial gene sets …) — columns: Gene models, RNA-seq, Single-cell, Proteome, Epigenome, Metagenome, Phenotype, Paleo, Mitogenome. A ✓ means the data type is present but is catalogued as a single resource rather than a set of countable records — columns: Genome, Function, Gene family, Co-expr., TE, JBrowse. A · means the data type is genuinely not available for that species in this release. Every populated cell is a link: it opens that module with the species already selected. Clicking a species name opens its species portal, which lists every resource it has on one page.
Reading the first two columns. Genome is set when the species has an assembly record (size, scaffold/contig N50, BUSCO, accession) — all 325 species have one. Gene models is set only when this database also carries the predicted gene set for that assembly, which is true for 145 species. A row whose count (#) is 1 therefore means “the assembly is catalogued here, but it has not been annotated in CnidoSite”, not “data are missing by mistake”. The matrix is rebuilt from the live database every hour; the same table is available as tab-separated text for scripted access.
