Which species have which data? The matrix below covers all 325 cnidarian
species in CnidoSite × 15 data types. Cells that carry data link straight to
that module with the species already selected, and show how much data there is; a blank cell means the data type
is genuinely not available for that species in this release. Click a species name to open its
species portal, which lists every resource it has on one page. Sort by
species name or by
class.
Species per data type:Genome 325Gene models 145Function 148Gene family 149RNA-seq 185Co-expr. 31Single-cell 15Proteome 15Epigenome 15Metagenome 24Phenotype 69Paleo 71Mitogenome 167TE 3JBrowse 145× clear
Showing 98 species in Hexacorallia having Functional annotation (coverage rebuilt 2026-09-18)
| Species | Class | # | Genome | Gene models | Function | Gene family | RNA-seq | Co-expr. | Single-cell | Proteome | Epigenome | Metagenome | Phenotype | Paleo | Mitogenome | TE | JBrowse |
|---|
| Acropora acuminata | Hexacorallia | 6 | ✓ | 26,152 | ✓ | ✓ | · | · | · | · | · | · | · | 1 | · | · | ✓ |
| Acropora austera | Hexacorallia | 7 | ✓ | 52,944 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Acropora awi | Hexacorallia | 5 | ✓ | 26,802 | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Acropora cervicornis | Hexacorallia | 10 | ✓ | 28,060 | ✓ | ✓ | 606 | · | · | · | 48 | 39 | · | 1 | 23 | · | ✓ |
| Acropora cytherea | Hexacorallia | 9 | ✓ | 27,328 | ✓ | ✓ | 1 | · | · | · | · | 5 | · | 1 | 20 | · | ✓ |
| Acropora digitifera | Hexacorallia | 10 | ✓ | 34,514 | ✓ | ✓ | 257 | ✓ | · | · | 1 | · | · | 1 | 19 | · | ✓ |
| Acropora echinata | Hexacorallia | 5 | ✓ | 26,171 | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Acropora florida | Hexacorallia | 7 | ✓ | 27,574 | ✓ | ✓ | · | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Acropora gemmifera | Hexacorallia | 8 | ✓ | 26,270 | ✓ | ✓ | 130 | ✓ | · | · | · | · | · | 1 | · | · | ✓ |
| Acropora hemprichii | Hexacorallia | 7 | ✓ | 33,304 | ✓ | ✓ | 3 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Acropora hyacinthus | Hexacorallia | 10 | ✓ | 27,216 | ✓ | ✓ | 858 | ✓ | · | · | 8 | · | · | 1 | 19 | · | ✓ |
| Acropora intermedia | Hexacorallia | 8 | ✓ | 26,983 | ✓ | ✓ | 12 | · | · | · | · | · | · | 1 | 23 | · | ✓ |
| Acropora loripes | Hexacorallia | 6 | ✓ | 28,198 | ✓ | ✓ | 2 | · | · | · | · | · | · | · | · | · | ✓ |
| Acropora microphthalma | Hexacorallia | 8 | ✓ | 26,385 | ✓ | ✓ | 12 | · | · | · | · | · | · | 1 | 21 | · | ✓ |
| Acropora millepora | Hexacorallia | 11 | ✓ | 41,861 | ✓ | ✓ | 1,581 | ✓ | 2 | · | 15 | · | · | 1 | 22 | · | ✓ |
| Acropora muricata | Hexacorallia | 10 | ✓ | 27,410 | ✓ | ✓ | 101 | ✓ | 2 | · | · | · | · | 1 | 19 | · | ✓ |
| Acropora nasuta | Hexacorallia | 7 | ✓ | 27,380 | ✓ | ✓ | · | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Acropora palmata | Hexacorallia | 11 | ✓ | 34,127 | ✓ | ✓ | 802 | ✓ | · | · | 32 | 375 | · | 1 | 18 | · | ✓ |
| Acropora pulchra | Hexacorallia | 8 | ✓ | 48,183 | ✓ | ✓ | 12 | · | · | · | · | · | · | 1 | 22 | · | ✓ |
| Acropora selago | Hexacorallia | 9 | ✓ | 27,037 | ✓ | ✓ | 24 | ✓ | · | · | 4 | · | · | 1 | · | · | ✓ |
| Acropora spathulata | Hexacorallia | 6 | ✓ | 52,712 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | · | · | ✓ |
| Acropora tenuis | Hexacorallia | 9 | ✓ | 27,237 | ✓ | ✓ | 1,306 | ✓ | · | · | · | · | · | 1 | 19 | · | ✓ |
| Acropora yongei | Hexacorallia | 7 | ✓ | 27,453 | ✓ | ✓ | · | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Actinernus sp. WN-2022 | Hexacorallia | 8 | ✓ | 44,971 | ✓ | ✓ | 4 | · | · | · | · | · | · | · | 21 | ✓ | ✓ |
| Actinia equina | Hexacorallia | 9 | ✓ | 55,608 | ✓ | ✓ | 9 | · | · | · | 5 | 7 | · | · | 26 | · | ✓ |
| Actinia mediterranea | Hexacorallia | 7 | ✓ | 50,249 | ✓ | ✓ | 4 | · | · | · | · | · | · | · | 25 | · | ✓ |
| Actinia tenebrosa | Hexacorallia | 9 | ✓ | 27,038 | ✓ | ✓ | 18 | ✓ | · | 1 | · | · | · | · | 25 | · | ✓ |
| Actinoscyphia liui | Hexacorallia | 6 | ✓ | 33,127 | ✓ | ✓ | 6 | · | · | · | · | · | · | · | · | · | ✓ |
| Actinostola sp. cb2023 | Hexacorallia | 6 | ✓ | 20,813 | ✓ | ✓ | · | · | · | · | · | · | · | · | · | ✓ | ✓ |
| Alvinactis idsseensis sp. Nov. | Hexacorallia | 7 | ✓ | 31,961 | ✓ | ✓ | 3 | · | · | · | · | · | · | · | · | ✓ | ✓ |
| Anthopleura xanthogrammica | Hexacorallia | 7 | ✓ | 39,672 | ✓ | ✓ | 4 | · | · | · | · | · | · | · | 25 | · | ✓ |
| Astrangia poculata | Hexacorallia | 7 | ✓ | 48,185 | ✓ | ✓ | 125 | ✓ | · | · | · | · | · | · | · | · | ✓ |
| Astreopora myriophthalma | Hexacorallia | 8 | ✓ | 38,293 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Blastomussa wellsi | Hexacorallia | 6 | ✓ | 33,866 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | · | · | ✓ |
| Catalaphyllia jardinei | Hexacorallia | 7 | ✓ | 59,755 | ✓ | ✓ | 13 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Cladopsammia gracilis | Hexacorallia | 6 | ✓ | 62,321 | ✓ | ✓ | 32 | · | · | · | · | · | · | · | · | · | ✓ |
| Colpophyllia natans | Hexacorallia | 9 | ✓ | 36,154 | ✓ | ✓ | 16 | · | · | · | · | 3 | · | 1 | 19 | · | ✓ |
| Condylactis gigantea | Hexacorallia | 7 | ✓ | 36,079 | ✓ | ✓ | 8 | · | · | · | · | · | · | · | 25 | · | ✓ |
| Cyphastrea salae | Hexacorallia | 6 | ✓ | 38,235 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | · | · | ✓ |
| Dendrogyra cylindrus | Hexacorallia | 8 | ✓ | 42,998 | ✓ | ✓ | 1 | · | · | · | · | 3 | · | 1 | · | · | ✓ |
| Dendrophyllia cribrosa | Hexacorallia | 7 | ✓ | 46,987 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | 21 | · | ✓ |
| Desmophyllum pertusum | Hexacorallia | 7 | ✓ | 37,485 | ✓ | ✓ | 110 | · | · | · | · | · | · | · | 22 | · | ✓ |
| Diadumene lineata | Hexacorallia | 7 | ✓ | 30,937 | ✓ | ✓ | 4 | · | · | · | · | · | · | · | 26 | · | ✓ |
| Duncanopsammia axifuga | Hexacorallia | 7 | ✓ | 52,571 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Echinopora horrida | Hexacorallia | 6 | ✓ | 47,502 | ✓ | ✓ | 2 | · | · | · | · | · | · | · | · | · | ✓ |
| Edwardsia elegans | Hexacorallia | 7 | ✓ | 49,838 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | 23 | · | ✓ |
| Exaiptasia diaphana | Hexacorallia | 10 | ✓ | 26,043 | ✓ | ✓ | 479 | ✓ | · | 4 | 170 | · | · | · | 26 | · | ✓ |
| Fimbriaphyllia ancora | Hexacorallia | 9 | ✓ | 27,538 | ✓ | ✓ | 41 | ✓ | · | · | · | · | · | 1 | 22 | · | ✓ |
| Galaxea fascicularis | Hexacorallia | 10 | ✓ | 22,419 | ✓ | ✓ | 79 | ✓ | · | · | · | 72 | · | 1 | 25 | · | ✓ |
| Leptoseris scabra | Hexacorallia | 6 | ✓ | 35,742 | ✓ | ✓ | · | · | · | · | · | · | · | 1 | · | · | ✓ |
| Lophelia pertusa | Hexacorallia | 7 | ✓ | 40,680 | ✓ | ✓ | 110 | ✓ | · | · | · | · | · | · | · | · | ✓ |
| Madracis auretenra | Hexacorallia | 8 | ✓ | 36,768 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Madracis senaria | Hexacorallia | 6 | ✓ | 42,578 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | · | · | ✓ |
| Meandrina meandrites | Hexacorallia | 7 | ✓ | 42,968 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Metridium senile | Hexacorallia | 7 | ✓ | 37,436 | ✓ | ✓ | 12 | · | · | · | · | · | · | · | 22 | · | ✓ |
| Micromussa lordhowensis | Hexacorallia | 6 | ✓ | 48,324 | ✓ | ✓ | 2 | · | · | · | · | · | · | · | · | · | ✓ |
| Montipora cactus | Hexacorallia | 8 | ✓ | 55,029 | ✓ | ✓ | 3 | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Montipora capitata | Hexacorallia | 10 | ✓ | 36,692 | ✓ | ✓ | 201 | ✓ | · | · | 3 | 80 | · | 1 | · | · | ✓ |
| Montipora capricornis | Hexacorallia | 9 | ✓ | 46,183 | ✓ | ✓ | 37 | ✓ | 1 | · | · | · | · | 1 | · | · | ✓ |
| Montipora efflorescens | Hexacorallia | 8 | ✓ | 48,795 | ✓ | ✓ | 7 | · | · | · | · | · | · | 1 | 23 | · | ✓ |
| Montipora foliosa | Hexacorallia | 9 | ✓ | 46,766 | ✓ | ✓ | 36 | ✓ | 1 | · | · | · | · | 1 | · | · | ✓ |
| Montipora grisea | Hexacorallia | 6 | ✓ | 41,982 | ✓ | ✓ | · | · | · | · | · | · | · | 1 | · | · | ✓ |
| Nematostella vectensis | Hexacorallia | 11 | ✓ | 32,371 | ✓ | ✓ | 3,139 | ✓ | 11 | 3 | 194 | 80 | · | · | · | · | ✓ |
| Oculina arbuscula | Hexacorallia | 8 | ✓ | 43,352 | ✓ | ✓ | 14 | · | 2 | · | · | 10 | · | · | · | · | ✓ |
| Oculina patagonica | Hexacorallia | 8 | ✓ | 39,483 | ✓ | ✓ | 1 | · | 2 | · | · | · | · | · | 21 | · | ✓ |
| Orbicella faveolata | Hexacorallia | 11 | ✓ | 32,588 | ✓ | ✓ | 696 | ✓ | 1 | · | · | 76 | · | 1 | 22 | · | ✓ |
| Orbicella franksi | Hexacorallia | 8 | ✓ | 38,071 | ✓ | ✓ | 65 | · | · | · | · | · | · | 1 | 19 | · | ✓ |
| Pachyseris speciosa | Hexacorallia | 8 | ✓ | 39,161 | ✓ | ✓ | 1 | · | · | · | · | 16 | · | 1 | · | · | ✓ |
| Palythoa mizigama | Hexacorallia | 6 | ✓ | 32,485 | ✓ | ✓ | · | · | · | · | · | · | · | · | 23 | · | ✓ |
| Palythoa umbrosa | Hexacorallia | 5 | ✓ | 26,564 | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Paracondylactis sinensis | Hexacorallia | 6 | ✓ | 26,361 | ✓ | ✓ | · | · | · | · | · | · | · | · | 26 | · | ✓ |
| Paraphelliactis xishaensis sp. nov. | Hexacorallia | 6 | ✓ | 32,550 | ✓ | ✓ | · | · | · | · | · | · | · | · | 20 | · | ✓ |
| Platygyra sinensis | Hexacorallia | 7 | ✓ | 62,639 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Plumapathes pennacea | Hexacorallia | 6 | ✓ | 43,877 | ✓ | ✓ | 3 | · | · | · | · | · | · | · | · | · | ✓ |
| Pocillopora acuta | Hexacorallia | 6 | ✓ | 33,731 | ✓ | ✓ | 6 | · | · | · | · | · | · | · | · | · | ✓ |
| Pocillopora damicornis | Hexacorallia | 10 | ✓ | 25,423 | ✓ | ✓ | 637 | · | · | · | 28 | 60 | · | 1 | 22 | · | ✓ |
| Pocillopora meandrina | Hexacorallia | 7 | ✓ | 5,342 | ✓ | ✓ | · | · | · | · | 27 | · | · | · | 22 | · | ✓ |
| Pocillopora verrucosa | Hexacorallia | 9 | ✓ | 37,407 | ✓ | ✓ | 8 | · | 1 | · | · | 4 | · | 1 | · | · | ✓ |
| Podabacia crustacea | Hexacorallia | 7 | ✓ | 29,343 | ✓ | ✓ | 3 | · | · | · | · | · | · | · | 22 | · | ✓ |
| Porites australiensis | Hexacorallia | 7 | ✓ | 35,911 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Porites compressa | Hexacorallia | 7 | ✓ | 44,131 | ✓ | ✓ | 15 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Porites cylindrica | Hexacorallia | 9 | ✓ | 37,612 | ✓ | ✓ | 13 | · | · | · | · | 12 | · | 1 | 25 | · | ✓ |
| Porites divaricata | Hexacorallia | 7 | ✓ | 31,269 | ✓ | ✓ | 2 | · | · | · | · | · | · | 1 | · | · | ✓ |
| Porites evermanni | Hexacorallia | 6 | ✓ | 7,757 | ✓ | ✓ | · | · | · | · | · | · | · | 1 | · | · | ✓ |
| Porites harrisoni | Hexacorallia | 6 | ✓ | 27,824 | ✓ | ✓ | · | · | · | · | · | · | · | · | 25 | · | ✓ |
| Porites lobata | Hexacorallia | 9 | ✓ | 63,853 | ✓ | ✓ | 101 | · | · | · | · | 45 | · | 1 | 25 | · | ✓ |
| Porites lutea | Hexacorallia | 9 | ✓ | 32,437 | ✓ | ✓ | 80 | · | · | · | · | 263 | · | 1 | 37 | · | ✓ |
| Porites rus | Hexacorallia | 8 | ✓ | 43,885 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | 37 | · | ✓ |
| Rhodactis osculifera | Hexacorallia | 6 | ✓ | 35,021 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | · | · | ✓ |
| Ricordea florida | Hexacorallia | 7 | ✓ | 54,520 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | 21 | · | ✓ |
| Scolanthus callimorphus | Hexacorallia | 7 | ✓ | 24,595 | ✓ | ✓ | 1 | · | · | · | · | · | · | · | 19 | · | ✓ |
| Siderastrea radians | Hexacorallia | 9 | ✓ | 73,674 | ✓ | ✓ | 1 | · | · | · | · | 73 | · | 1 | 21 | · | ✓ |
| Siderastrea siderea | Hexacorallia | 9 | ✓ | 63,854 | ✓ | ✓ | 85 | ✓ | · | · | · | 32 | · | 1 | · | · | ✓ |
| Stephanocoenia intersepta | Hexacorallia | 8 | ✓ | 42,339 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | 23 | · | ✓ |
| Stylophora pistillata | Hexacorallia | 12 | ✓ | 23,946 | ✓ | ✓ | 362 | · | 2 | 2 | 12 | 256 | · | 1 | 24 | · | ✓ |
| Telmatactis stephensoni | Hexacorallia | 8 | ✓ | 52,425 | ✓ | ✓ | 18 | ✓ | · | 1 | · | · | · | · | · | · | ✓ |
| Tubastraea coccinea | Hexacorallia | 8 | ✓ | 37,308 | ✓ | ✓ | 4 | · | · | · | · | · | · | 1 | 21 | · | ✓ |
| Turbinaria reniformis | Hexacorallia | 7 | ✓ | 28,961 | ✓ | ✓ | 1 | · | · | · | · | · | · | 1 | · | · | ✓ |
How to read a cell. A number is the count of records of that data type held for the species (samples, peaks, occurrences, mitochondrial gene sets …) — columns: Gene models, RNA-seq, Single-cell, Proteome, Epigenome, Metagenome, Phenotype, Paleo, Mitogenome. A ✓ means the data type is present but is catalogued as a single resource rather than a set of countable records — columns: Genome, Function, Gene family, Co-expr., TE, JBrowse. A · means the data type is genuinely not available for that species in this release. Every populated cell is a link: it opens that module with the species already selected. Clicking a species name opens its species portal, which lists every resource it has on one page.
Reading the first two columns. Genome is set when the species has an assembly record (size, scaffold/contig N50, BUSCO, accession) — all 325 species have one. Gene models is set only when this database also carries the predicted gene set for that assembly, which is true for 145 species. A row whose count (#) is 1 therefore means “the assembly is catalogued here, but it has not been annotated in CnidoSite”, not “data are missing by mistake”. The matrix is rebuilt from the live database every hour; the same table is available as tab-separated text for scripted access.
