Which species have which data? The matrix below covers all 325 cnidarian species in CnidoSite × 15 data types. A green cell links straight to that module with the species already selected; a blank cell means the data type is genuinely not available for that species in this release. Click a species name to open its species portal, which lists every resource it has on one page.
Showing 99 species in Hexacorallia having Gene family (orthogroup) (2026-09-18)
| Species | # | Genome | Gene models | Function | Gene family | RNA-seq | Co-expr. | Single-cell | Proteome | Epigenome | Metagenome | Phenotype | Paleo | Mitogenome | TE | JBrowse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Acropora millepora AMILL Hexacorallia | 11 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | ✓ | · | · | ✓ | ✓ | · | ✓ |
| Acropora palmata APALM Hexacorallia | 11 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | ✓ | · | ✓ | ✓ | · | ✓ |
| Nematostella vectensis NVECT Hexacorallia | 11 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ |
| Orbicella faveolata OFAVE Hexacorallia | 11 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| Stylophora pistillata SPIST Hexacorallia | 11 | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | ✓ | ✓ | ✓ | · | ✓ | ✓ | · | ✓ |
| Acropora digitifera ADIGI Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | ✓ | · | ✓ |
| Acropora hyacinthus AHYAC Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | ✓ | · | ✓ |
| Acropora muricata AMURI Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | ✓ | · | ✓ |
| Exaiptasia diaphana EDIAP Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | ✓ | ✓ | · | · | · | ✓ | · | ✓ |
| Galaxea fascicularis GFASC Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| Montipora capitata MCAPI Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | ✓ | · | ✓ | · | · | ✓ |
| Acropora cervicornis ACERV Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | ✓ | · | ✓ | ✓ | · | ✓ |
| Acropora selago ASELA Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | · | · | ✓ |
| Acropora tenuis ATENU Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Actinia tenebrosa ATENE Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | ✓ | · | · | · | · | ✓ | · | ✓ |
| Fimbriaphyllia ancora FANCO Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Montipora capricornis MCAPR Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | · | ✓ |
| Montipora foliosa MFOLI Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | · | ✓ |
| Pocillopora damicornis PDAMI Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | ✓ | · | ✓ | ✓ | · | ✓ |
| Siderastrea siderea SSIDE Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | ✓ | · | ✓ | · | · | ✓ |
| Acropora gemmifera AGEMM Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | · | ✓ |
| Actinia equina AEQUI Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | ✓ | · | · | ✓ | · | ✓ |
| Colpophyllia natans CNATA Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| Pocillopora verrucosa PVERR Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | · | ✓ | · | · | ✓ |
| Porites cylindrica PCYLI Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| Porites lobata PLOBA Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| Porites lutea PLUTE Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| Siderastrea radians SRADI Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| Telmatactis stephensoni TSTEP Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | ✓ | · | · | · | · | · | · | ✓ |
| Acropora cytherea ACYTH Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | · | · | ✓ |
| Acropora florida AFLOR Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Acropora intermedia AINTE Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Acropora nasuta ANASU Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Acropora pulchra APULC Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Acropora yongei AYONG Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Astrangia poculata APOCU Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ |
| Astreopora myriophthalma AMYRI Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Dendrogyra cylindrus DCYLI Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | · | · | ✓ |
| Lophelia pertusa LPERT Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ |
| Madracis auretenra MAURE Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Montipora cactus MCACT Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Montipora efflorescens MEFFL Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Oculina arbuscula OARBU Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | · | · | · | · | ✓ |
| Oculina patagonica OPATA Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | · | · | · | ✓ | · | ✓ |
| Orbicella franksi OFRAN Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Pachyseris speciosa PSPEC Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | · | · | ✓ |
| Pocillopora meandrina PMEAN Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | · | · | ✓ | · | ✓ |
| Porites rus PRUS Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Stephanocoenia intersepta SINTE Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Tubastraea coccinea TCOCC Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| Acropora acuminata AACUM Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Acropora austera AAUST Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Acropora hemprichii AHEMP Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Acropora microphthalma AMICR Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Actinernus sp. WN-2022 ASP1 Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | ✓ | ✓ |
| Actinia mediterranea AMEDI Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| Actinostola sp. cb2023 ASP2 Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | ✓ | ✓ |
| Alvinactis idsseensis sp. Nov. AIDSS Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | ✓ | ✓ |
| Anthopleura xanthogrammica AXANT Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| Catalaphyllia jardinei CJARD Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Condylactis gigantea CGIGA Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| Dendrophyllia cribrosa DCRIB Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| Desmophyllum pertusum DPERT Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| Diadumene lineata DLINE Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| Duncanopsammia axifuga DAXIF Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Edwardsia elegans EELEG Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| Leptoseris scabra LSCAB Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Meandrina meandrites MMEAN Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Metridium senile MSENI Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| Montipora grisea MGRIS Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Palythoa mizigama PMIZI Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| Paracondylactis sinensis PSINE1 Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| Platygyra sinensis PSINE2 Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Podabacia crustacea PCRUS Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| Porites australiensis PAUST Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Porites compressa PCOMP Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Porites divaricata PDIVA Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Porites evermanni PEVER Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Porites harrisoni PHARR Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| Ricordea florida RFLOR Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| Scolanthus callimorphus SCALL Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| Turbinaria reniformis TRENI Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| Acropora awi AAWI Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Acropora echinata AECHI Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Acropora loripes ALORI Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Acropora spathulata ASPAT Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Actinoscyphia liui ALIUI Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Blastomussa wellsi BWELL Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Cladopsammia gracilis CGRAC2 Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Cyphastrea salae CSALA Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Echinopora horrida EHORR Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Madracis senaria MSENA Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Micromussa lordhowensis MLORD Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Palythoa umbrosa PUMBR Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Paraphelliactis xishaensis sp. nov. PXISH Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Plumapathes pennacea PPENN Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Pocillopora acuta PACUT Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Rhodactis osculifera ROSCU Hexacorallia | 5 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | · | ✓ |
| Taxipathes sp. SY275-mao Taxipathes_sp_SY275_mao Hexacorallia | 2 | ✓ | · | · | ✓ | · | · | · | · | · | · | · | · | · | · | · |
Legend: ✓ = data available (click to open the module for that species) ·
· = not available in this release. The numbers behind this matrix are rebuilt from the
live database every hour; the same table is available as
tab-separated text
for scripted access.
Reading the first two columns. Genome assembly is set when the species has an assembly
record (size, scaffold/contig N50, BUSCO, accession) — all 325 species have one.
Gene models is set only when this database also carries the predicted gene set for that
assembly, which is true for 145 species. A row whose count (#) is 1
therefore means “the assembly is catalogued here, but it has not been annotated in CnidoSite”,
not “data are missing by mistake”.
