Which species have which data? The matrix below covers all 325 cnidarian species in CnidoSite × 15 data types. A green cell links straight to that module with the species already selected; a blank cell means the data type is genuinely not available for that species in this release. Click a species name to open its species portal, which lists every resource it has on one page.
Showing 145 species having Gene annotation · page 1 of 2 (2026-09-16)
| Species | # | Genome | Gene models | Function | Gene family | RNA-seq | Co-expr. | Single-cell | Proteome | Epigenome | Metagenome | Phenotype | Paleo | Mitogenome | TE | JBrowse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HVULG Hydra vulgaris Hydrozoa | 12 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | ✓ |
| AMILL Acropora millepora Hexacorallia | 11 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | ✓ | · | · | ✓ | ✓ | · | ✓ |
| APALM Acropora palmata Hexacorallia | 11 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | ✓ | · | ✓ | ✓ | · | ✓ |
| NVECT Nematostella vectensis Hexacorallia | 11 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ |
| OFAVE Orbicella faveolata Hexacorallia | 11 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| SPIST Stylophora pistillata Hexacorallia | 11 | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | ✓ | ✓ | ✓ | · | ✓ | ✓ | · | ✓ |
| ADIGI Acropora digitifera Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | ✓ | · | ✓ |
| AHYAC Acropora hyacinthus Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | ✓ | · | ✓ |
| AMURI Acropora muricata Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | ✓ | · | ✓ |
| AAURI1 Aurelia aurita Scyphozoa | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | ✓ | ✓ | · | ✓ | · | ✓ |
| ACOER Aurelia coerulea Scyphozoa | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | · | ✓ |
| CHEMI Clytia hemisphaerica Hydrozoa | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | ✓ | · | ✓ | · | ✓ |
| EDIAP Exaiptasia diaphana Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | ✓ | ✓ | · | · | · | ✓ | · | ✓ |
| GFASC Galaxea fascicularis Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| MCAPI Montipora capitata Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | ✓ | · | ✓ | · | · | ✓ |
| ACERV Acropora cervicornis Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | ✓ | · | ✓ | ✓ | · | ✓ |
| ASELA Acropora selago Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | · | · | ✓ |
| ATENU Acropora tenuis Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| ATENE Actinia tenebrosa Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | ✓ | · | · | · | · | ✓ | · | ✓ |
| EVERR Eunicella verrucosa Octocorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | ✓ | · | ✓ |
| FANCO Fimbriaphyllia ancora Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| HCOER Heliopora coerulea Octocorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | ✓ | · | ✓ |
| HSYMB Hydractinia symbiolongicarpus Hydrozoa | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ |
| MCAPR Montipora capricornis Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | · | ✓ |
| MFOLI Montipora foliosa Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | · | ✓ |
| PCLAV Paramuricea clavata Octocorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | ✓ | · | ✓ |
| PDAMI Pocillopora damicornis Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | ✓ | · | ✓ | ✓ | · | ✓ |
| SSIDE Siderastrea siderea Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | ✓ | · | ✓ | · | · | ✓ |
| AGEMM Acropora gemmifera Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | · | ✓ |
| AEQUI Actinia equina Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | ✓ | · | · | ✓ | · | ✓ |
| CNATA Colpophyllia natans Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| PVERR Pocillopora verrucosa Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | · | ✓ | · | · | ✓ |
| PCYLI Porites cylindrica Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| PLOBA Porites lobata Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| PLUTE Porites lutea Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| SRADI Siderastrea radians Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| TSTEP Telmatactis stephensoni Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | ✓ | · | · | · | · | · | · | ✓ |
| ACYTH Acropora cytherea Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | · | · | ✓ |
| AFLOR Acropora florida Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| AINTE Acropora intermedia Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| ANASU Acropora nasuta Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| APULC Acropora pulchra Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| AYONG Acropora yongei Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| APOCU Astrangia poculata Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ |
| AMYRI Astreopora myriophthalma Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| AAURI2 Aurelia aurita complex sp. Pacific Scyphozoa | 7 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ |
| CQUIN Chrysaora quinquecirrha Scyphozoa | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ | · | ✓ | · | ✓ |
| DCYLI Dendrogyra cylindrus Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | · | · | ✓ |
| DGIGA Dendronephthya gigantea Octocorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ | · | ✓ | · | ✓ |
| ECAVO Eunicella cavolini Octocorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ | · | ✓ | · | ✓ |
| HVIRI Hydra viridissima Hydrozoa | 7 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ |
| LSARM Leptogorgia sarmentosa Octocorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ | · | ✓ | · | ✓ |
| LPERT Lophelia pertusa Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ |
| MAURE Madracis auretenra Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| MCOMP Millepora complanata Hydrozoa | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | ✓ | · | ✓ | · | · | · | · | ✓ |
| MCACT Montipora cactus Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| MEFFL Montipora efflorescens Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| NNOMU Nemopilema nomurai Scyphozoa | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ | · | ✓ | · | ✓ |
| OARBU Oculina arbuscula Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | · | · | · | · | ✓ |
| OPATA Oculina patagonica Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | · | · | · | ✓ | · | ✓ |
| OFRAN Orbicella franksi Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| PSPEC Pachyseris speciosa Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | ✓ | · | · | ✓ |
| PPAPI Paragorgia papillata Octocorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ | · | ✓ | · | ✓ |
| PNOCT Pelagia noctiluca Scyphozoa | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ | · | ✓ | · | ✓ |
| PMEAN Pocillopora meandrina Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | · | · | ✓ | · | ✓ |
| PRUS Porites rus Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| RESCU Rhopilema esculentum Scyphozoa | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ | · | ✓ | · | ✓ |
| SINTE Stephanocoenia intersepta Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| TCOCC Tubastraea coccinea Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| AACUM Acropora acuminata Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| AAUST Acropora austera Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| AHEMP Acropora hemprichii Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| AMICR Acropora microphthalma Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| ASP1 Actinernus sp. WN-2022 Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | ✓ | ✓ |
| AMEDI Actinia mediterranea Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| ASP2 Actinostola sp. cb2023 Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | ✓ | ✓ |
| AIDSS Alvinactis idsseensis sp. Nov. Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | · | ✓ | ✓ |
| AXANT Anthopleura xanthogrammica Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| ASP3 Aurelia sp. 4 Dawson et al 2005 Scyphozoa | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| CGRAC1 Callogorgia gracilis Octocorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ | · | · | · | ✓ |
| CJARD Catalaphyllia jardinei Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| CMOSA Catostylus mosaicus Scyphozoa | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ | · | · | · | ✓ |
| CGIGA Condylactis gigantea Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| DCRIB Dendrophyllia cribrosa Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| DPERT Desmophyllum pertusum Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| DLINE Diadumene lineata Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| DAXIF Duncanopsammia axifuga Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| EELEG Edwardsia elegans Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| HIMPE Hemicorallium imperiale Octocorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ | · | · | · | ✓ |
| HSALM Henneguya salminicola Myxozoa | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | · | · | · | · | ✓ |
| HOLIG Hydra oligactis Hydrozoa | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| LSCAB Leptoseris scabra Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| MPAPU Mastigias papua Scyphozoa | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ | · | · | · | ✓ |
| MMEAN Meandrina meandrites Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| MSENI Metridium senile Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| MALCI Millepora alcicornis Hydrozoa | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| MDICH Millepora dichotoma Hydrozoa | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| MGRIS Montipora grisea Hexacorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | ✓ | · | · | ✓ |
| MVIRU Morbakka virulenta Cubozoa | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ | · | ✓ |
| MMURI Muricea muricata Octocorallia | 6 | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ | · | · | · | ✓ |
Legend: ✓ = data available (click to open the module for that species) ·
· = not available in this release. The numbers behind this matrix are rebuilt from the
live database every hour; the same table is available as
tab-separated text
for scripted access.
Reading the first two columns. Genome assembly is set when the species has an assembly
record (size, scaffold/contig N50, BUSCO, accession) — all 325 species have one.
Gene models is set only when this database also carries the predicted gene set for that
assembly, which is true for 145 species. A row whose count (#) is 1
therefore means “the assembly is catalogued here, but it has not been annotated in CnidoSite”,
not “data are missing by mistake”.
